Selected publications

Scientific highlights of IGB
Filter for
Please find all scientific publications of IGB under > scientific publications
For more detailed information please refer to our > library catalogue
591 - 600 of 746 items
December 2021
PLoS Biology. - 19(2021)8, e3001365

PhyloFisher: a phylogenomic package for resolving eukaryotic relationships

Alexander K. Tice; David Žihala; Tomáš Pánek; Robert E. Jones; Eric D. Salomaki; Serafim Nenarokov; Fabien Burki; Marek Eliáš; Laura Eme; Andrew J. Roger; Antonis Rokas; Xing-Xing Shen; Jürgen F. H. Strassert; Martin Kolísko; Matthew W. Brown

The authors developed a user-friendly software tool (“PhyloFisher”) for phylogenomic analyses of eukaryotes. This software package aids in the construction and curation of protein sequence-based datasets, conducts post-assembly analyses, and allows visualisation of the results.

December 2021
Systematic Biology. - 71(2022)1, 105–120

Phylogenomic insights into the origin of primary plastids

Iker Irisarri; Jürgen F. H. Strassert; Fabien Burki

Did primary plastids originate by a single or multiple endosymbiosis events between a heterotrophic host eukaryote and cyanobacteria? By using a phylogenomic approach to untangle the diversification of the primary plastid-bearing lineages (Archaeplastida), the authors propose a single endosymbiosis but highlight and discuss the affiliation of the plastid-lacking Picozoa to the Archaeplastida.

December 2021
Journal of Applied Ecology. - 58(2021)9, 1933-1944

Increased sediment deposition triggered by climate change impacts freshwater pearl mussel habitats and metapopulations

Damiano Baldan; Jens Kiesel; Christoph Hauer; Sonja C. Jähnig; Thomas Hein

The authors investigated the influence of climate change on the river pearl mussel through a coupled, complex model cascade in the catchment area of the Aist (Austria). Discharge changes might lead to reduced sediment transport capacity and to increased fine sediment input. As a consequence the mussel's dispersal probability decreases to up to 76% of the maximum theoretical value. 

December 2021
Journal of Hydrology. - 600(2021), Art. 126685

Spatio-temporal variations in stable isotopes in peri-urban catchments: a preliminary assessment of potential and challenges in assessing streamflow sources

Lena-Marie Kuhlemann; Doerthe Tetzlaff; Chris Soulsby

The authors used isotope tracers and water quality measurements, hydrometric and climatic data to investigate seasonal changes in water sources in the River Erpe. Downstream, flows were dominated by effluent from a large wastewater treatment plant, especially in summer. They gained new insights into how lowland, peri-urban catchments with complex land use function hydrologically.

December 2021
Scientific Reports. - 11(2021), Art. 23518

Competition alters species’ plastic and genetic response to environmental change

Lynn Govaert; Luis J. Gilarranz; Florian Altermatt

The authors exposed three freshwater ciliates to long-term selection of increasing salinity in the absence and presence of competitors. Their results show that the evolutionary and plastic responses to increasing salinity depended both on interspecific competition and the magnitude of the abiotic salinity change, ultimately determining species persistence.

December 2021
Functional Ecology. - 35(2021)10, 2138-2155

Integrating fundamental processes to understand eco-evolutionary community dynamics and patterns

Lynn Govaert; Florian Altermatt; Luc De Meester; Mathew A. Leibold; Mark A. McPeek; Jelena H. Pantel; Mark C. Urban

The authors propose a framework to study eco-evo dynamics in communities by considering interactions between the processes of evolutionary biology (selection, gene flow, genetic drift and mutation) and community ecology (selection, dispersal, ecological drift and speciation). Such a framework will enable explorations of the full range of eco-evo dynamics and guide the design of novel experiments.

December 2021
Landscape and Urban Planning. - 219(2022), Art. 104332

A plea for a worldwide development of dark infrastructure for biodiversity: practical examples and ways to go forward

Romain Sordello; Samuel Busson; Jérémie H. Cornuau; Philippe Deverchèrd; Baptiste Faure; Adrien Guetté; Franz Hölker; Christian Kerbiriouh; Thierry Lengagnei; Isabelle Le Viol; Travis Longcore; Pascal Moeschler; Jessica Ranzoni; Nicolas Raymn; Yorick Reyjol; Yoann Roulet; Sibylle Schroer; Jean Secondii; Nicolas Valet; Sylvie Vanpeene; Sébastien Vauclair

The authors advocate the worldwide development of a dark infrastructure. This refers to areas and corridors without excessive artificial light at night that protect biodiversity from light pollution. A guide to getting there.

December 2021
Proceedings of the Royal Society of London : Ser. B, Biological Sciences. - 288(2021)1959, Art. 20210803

Genomic regions associated with adaptation to predation in Daphnia often include members of expanded gene families

Xiuping Zhang; David Blair; Justyna Wolinska; Xiaolin Ma; Wenwu Yang; Wei Hu; Mingbo Yin

The authors investigated the genetic basis underpinning the adaptation of prey to predation. The expansion of multiple gene families might be a key evolutionary event for Daphnia to survive in a habitat containing predators. For example, the expansions of gene families associated with chemoreception and vision allow Daphnia to enhance detection of predation risk.

December 2021
Environmental Pollution. - 290(2021), Art. 118088

Importance of exposure route in determining nanosilver impacts on a stream detrital processing chain

Daniela Batista; Darren P. Giling; Arunava Pradhan; Cláudia Pascoal; Fernanda Cássio; Mark O.Gessner

The paper reports impacts of silver nanoparticles (AgNPs) and ionic silver (Ag+) on an aquatic processing chain of leaves, microbes, shredders and collectors. AgNPs and Ag+ affect multiple links of the processing chain at environmentally realistic concentrations. Shredders respond more sensitively than collectors. Leaf-associated fungal biomass and microbial leaf decomposition are being reduced.

December 2021
Water Research. - 196(2021), Art. 116981

Making waves. Bridging theory and practice towards multiple stressor management in freshwater ecosystems

Bryan M. Spears; Daniel S. Chapman; Laurence Carvalho; Christian K. Feld; Mark O. Gessner; Jeremy J. Piggott; Lindsay F. Banin; Cayetano Gutiérrez-Cánovas; Anne Lyche Solheim; Jessica A. Richardson; Rafaela Schinegger; Pedro Segurado; Stephen J. Thackeray; Sebastian Birk

The authors identified limitations to the development of multiple-stressor management strategies and address these within an empirical framework. They give recommendations for the use of empirical models and experiments to predict the effects of freshwater degradation in response to changes in multiple stressors and offer practical advice for management strategies in 3 multiple-stressor scenarios.