Dr.
Heiner Kuhl
Scientific Staff
Phone
+49 (0)30 64181 792
Room
314
Müggelseedamm 301, 12587 Berlin
Profile
Publications
Publications
2024
June 2024
Heiner Kuhl; Wen Hui Tan; Christophe Klopp; Wibke Kleiner; Baturalp Koyun; Mitica Ciorpac; Romain Feron; Martin Knytl; Werner Kloas; Manfred Schartl; Christoph Winkler; Matthias Stöck
A candidate sex determination locus in amphibians which evolved by structural variation between X- and Y-chromosomes
Nature Communications. - 15(2024), Art. 4781
2023
June 2023
Hanna Panagiotopoulou; Kacper Marzecki; Jan Gawor; Heiner Kuhl; Michał Koper; Piotr Weglenski; Magdalena Fajkowska; Mirosław Szczepkowski; Mateusz Baca; Joern Gessner; Magdalena Płecha; Małgorzata Rzepkowska
2022
July 2022
Heiner Kuhl; Kang Du; Manfred Schartl; Lukáš Kalous; Matthias Stöck; Dunja K. Lamatsch
Equilibrated evolution of the mixed auto-/allopolyploid haplotype-resolved genome of the invasive hexaploid Prussian carp
Nature Communications. - 13(2022), Art. 4092
2021
September 2021
Mbaye Tine; Heiner Kuhl; Peter R. Teske; Richard Reinhardt
Genome-wide analysis of European sea bass provides insights into the evolution and functions of single-exon genes
Ecology and Evolution. - 11(2021)11, 6546-6557
July 2021
Matthias Stöck; Lukáš Kratochvíl; Heiner Kuhl; Michail Rovatsos; Ben J. Evans; Alexander Suh; Nicole Valenzuela; Frédéric Veyrunes; Qi Zhou; Tony Gamble; Blanche Capel; Manfred Schartl; Yann Guiguen
A brief review of vertebrate sex evolution with a pledge for integrative research: towards ‘sexomics’
Philosophical Transactions of the Royal Society of London : Ser. B, Biological Sciences. - 376(2021)1832, Art. 20200426
July 2021
Heiner Kuhl; Yann Guiguen; Christin Höhne; Eva Kreuz; Kang Du; Christophe Klopp; Céline Lopez-Roques; Elena Santidrian Yebra-Pimentel; Mitica Ciorpac; Jörn Gessner; Daniela Holostenco; Wibke Kleiner; Klaus Kohlmann; Dunja K. Lamatsch; Dmitry Prokopov; Anastasia Bestin; Emmanuel Bonpunt; Bastien Debeuf; Pierrick Haffray; Romain Morvezen; Pierre Patrice; Radu Suciu; Ron Dirks; Sven Wuertz; Werner Kloas; Manfred Schartl; Matthias Stöck
A 180 Myr-old female-specific genome region in sturgeon reveals the oldest known vertebrate sex determining system with undifferentiated sex chromosomes
Philosophical Transactions of the Royal Society of London : Ser. B, Biological Sciences. - 376(2021)1832, 20200089
June 2021
Christin Höhne; Dmitry Prokopov; Heiner Kuhl; Kang Du; Christophe Klopp; Sven Wuertz; Vladimir Trifonov; Matthias Stöck
The immune system of sturgeons and paddlefish (Acipenseriformes): a review with new data from a chromosome-scale sturgeon genome
Reviews in Aquaculture. - 13(2021)3, 1709-1729
2020
March 2021
Jakob C. Mueller; Martina Carrete; Stefan Boerno; Heiner Kuhl; José L. Tella; Bart Kempenaers
Genes acting in synapses and neuron projections are early targets of selection during urban colonization
Molecular Ecology. - 29(2020)18, 3403–3412
March 2021
by Mikhail V. Fofanov; Dmitry Yu. Prokopov; Heiner Kuhl; Manfred Schartl; Vladimir A. Trifonov
Evolution of MicroRNA biogenesis genes in the Sterlet (Acipenser ruthenus) and other polyploid vertebrates
Molecular Biology and Evolution. - 21(2020)24, Art. 9562
March 2021
Heiner Kuhl; Carolina Frankl-Vilches; Antje Bakker; Gerald Mayr; Gerhard Nikolaus; Stefan T. Boerno; Sven Klages; Bernd Timmermann; Manfred Gahr
An unbiased molecular approach using 3′-UTRs resolves the Avian Family-Level tree of life
Molecular Biology and Evolution. - 38(2020)1, 108–127
March 2021
Francisca M. Real; Stefan A. Haas; Paolo Franchini; Peiwen Xiong; Oleg Simakov; Heiner Kuhl; Robert Schöpflin; David Heller; M-Hossein Moeinzadeh; Verena Heinrich; Thomas Krannich; Annkatrin Bressin; Michaela F. Hartmann; Stefan A. Wudy; Dina K. N. Dechmann; Alicia Hurtado; Francisco J. Barrionuevo; Magdalena Schindler; Izabela Harabula; Marco Osterwalder; Michael Hiller; Lars Wittler; Axel Visel; Bernd Timmermann; Axel Meyer; Martin Vingron; Rafael Jiménez; Stefan Mundlos; Darío G. Lupiáñez
The mole genome reveals regulatory rearrangements associated with adaptive intersexuality
Science. - 370(2020)6513, 208-214
August 2020
Shan He; Ling LI; Li-Yuan Lv; Wen-Jing Cai; Ya-Qi Dou; Jiao Li; Shu-Lin Tang; Xu Chen; Zhen Zhang; Jing Xu; Yan-Peng Zhang; Zhan Yin; Sven Wuertz; Ya-Xiong Tao; Heiner Kuhl; Xu-Fang Liang
Mandarin fish (Sinipercidae) genomes provide insights into innate predatory feeding
Communications Biology. - 3(2020)art. 361
June 2020
Kang Du; Matthias Stöck; Susanne Kneitz; Christophe Klopp; Joost M. Woltering; Mateus Contar Adolfi; Romain Feron; Dmitry Prokopov; Alexey Makunin; Ilya Kichigin; Cornelia Schmidt; Petra Fischer; Heiner Kuhl; Sven Wuertz; Jörn Gessner; Werner Kloas; Cédric Cabau; Carole Iampietro; Hugues Parrinello; Chad Tomlinson; Laurent Journot; John H. Postlethwait; Ingo Braasch; Vladimir Trifonov; Wesley C. Warren; Axel Meyer; Yann Guiguen; Manfred Schartl
The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization
Nature Ecology & Evolution. - 4(2020)6, S. 841-852
May 2020
Heiner Kuhl; Ling Li; Sven Wuertz; Matthias Stöck; Xu-Fang Liang; Christophe Klopp
CSA: a high-throughput chromosome-scale assembly pipeline for vertebrate genomes
GigaScience. - 9(2020)5, giaa034
2019
December 2019
Hervé Philippe; Albert J. Poustka; Marta Chiodin; Katharina J. Hoff; Christophe Dessimoz; Bartlomiej Tomiczek; Philipp H. Schiffer; Steven Müller; Daryl Domman; Matthias Horn; Heiner Kuhl; Bernd Timmermann; Noriyuki Satoh; Tomoe Hikosaka-Katayama; Hiroaki Nakano; Matthew L. Rowe; Maurice E. Elphick; Morgane Thomas-Chollier; Thomas Hankeln; Florian Mertes; Andreas Wallberg; Jonathan P. Rast; Richard R. Copley; Pedro Martinez; Maximilian J. Telford
Mitigating anticipated effects of systematic errors supports sister-group relationship between Xenacoelomorpha and Ambulacraria
Current Biology. - 29(2019)11, S. 1818-1826
October 2019
Sylvia Hofmann; Heiner Kuhl; Chitra Bahadur Baniya; Matthias Stöck
June 2019
Toni I. Gossmann; Achchuthan Shanmugasundram; Stefan Börno; Ludovic Duvaux; Christophe Lemaire; Heiner Kuhl; Sven Klages; Lee D. Roberts; Sophia Schade; Johanna M. Gostner; Falk Hildebrand; Jakob Vowinckel; Coraline Bichet; Michael Mülleder; Enrica Calvani; Aleksej Zelezniak; Julian L. Griffin; Peer Bork; Dominique Allaine; Aurelie Cohas; John J. Welch; Bernd Timmermann; Markus Ralser
Ice-age climate adaptations trap the Alpine marmot in a state of low genetic diversity
Current Biology. - 29(2019)10, S. 1712-1720
June 2019
L. Ribas; B. Crespo; N. Sanchez-Baizan; D. Xavier; H. Kuhl; J. M. Rodriguez; N. Diaz; S. Boltana; S. MacKenzie; F. Moran; S. Zanuy; A. Gomez; F. Piferrer
Characterization of the European Sea Bass (Dicentrarchus labrax) gonadal transcriptome during sexual development
Marine Biotechnology. - 21(2019)3, S. 359-373
April 2019
Matthias Stöck; Fatemeh Fakharzadeh; Heiner Kuhl; Beata Rozenblut-Koscisty; Sophie Leinweber; Riddhi Patel; Mehregan Ebrahimi; Sebastian Voitel; Josef Friedrich Schmidtler; Haji Gholi Kami; Maria Ogielska; Daniel W. Förster
2018
October 2018
Jakob C. Mueller; Heiner Kuhl; Stefan Boerno; Jose L. Tella : Martina Carrete; Bart Kempenaers
Evolution of genomic variation in the burrowing owl in response to recent colonization of urban areas
Proceedings of the Royal Society of London : Ser. B, Biological Sciences. - 285(2018)1878, art. 20180206
2017
June 2017
Müewer Oral; Julie Colleter; Michael Bekaert; John B. Taggart; Christos Palaiokostas; Brendan J. McAndrew; Marc Vandeputte; Beatrice Chatain; Heiner Kuhl; Richard Reinhardt; Stefano Peruzzi; David J. Penman
Gene-centromere mapping in meiotic gynogenetic European seabass
BMC Genomics. - 18(2017)449
June 2024
Heiner Kuhl; Wen Hui Tan; Christophe Klopp; Wibke Kleiner; Baturalp Koyun; Mitica Ciorpac; Romain Feron; Martin Knytl; Werner Kloas; Manfred Schartl; Christoph Winkler; Matthias Stöck
A candidate sex determination locus in amphibians which evolved by structural variation between X- and Y-chromosomes
Nature Communications. - 15(2024), Art. 4781
June 2023
Hanna Panagiotopoulou; Kacper Marzecki; Jan Gawor; Heiner Kuhl; Michał Koper; Piotr Weglenski; Magdalena Fajkowska; Mirosław Szczepkowski; Mateusz Baca; Joern Gessner; Magdalena Płecha; Małgorzata Rzepkowska
July 2022
Heiner Kuhl; Kang Du; Manfred Schartl; Lukáš Kalous; Matthias Stöck; Dunja K. Lamatsch
Equilibrated evolution of the mixed auto-/allopolyploid haplotype-resolved genome of the invasive hexaploid Prussian carp
Nature Communications. - 13(2022), Art. 4092
September 2021
Mbaye Tine; Heiner Kuhl; Peter R. Teske; Richard Reinhardt
Genome-wide analysis of European sea bass provides insights into the evolution and functions of single-exon genes
Ecology and Evolution. - 11(2021)11, 6546-6557
July 2021
Matthias Stöck; Lukáš Kratochvíl; Heiner Kuhl; Michail Rovatsos; Ben J. Evans; Alexander Suh; Nicole Valenzuela; Frédéric Veyrunes; Qi Zhou; Tony Gamble; Blanche Capel; Manfred Schartl; Yann Guiguen
A brief review of vertebrate sex evolution with a pledge for integrative research: towards ‘sexomics’
Philosophical Transactions of the Royal Society of London : Ser. B, Biological Sciences. - 376(2021)1832, Art. 20200426
July 2021
Heiner Kuhl; Yann Guiguen; Christin Höhne; Eva Kreuz; Kang Du; Christophe Klopp; Céline Lopez-Roques; Elena Santidrian Yebra-Pimentel; Mitica Ciorpac; Jörn Gessner; Daniela Holostenco; Wibke Kleiner; Klaus Kohlmann; Dunja K. Lamatsch; Dmitry Prokopov; Anastasia Bestin; Emmanuel Bonpunt; Bastien Debeuf; Pierrick Haffray; Romain Morvezen; Pierre Patrice; Radu Suciu; Ron Dirks; Sven Wuertz; Werner Kloas; Manfred Schartl; Matthias Stöck
A 180 Myr-old female-specific genome region in sturgeon reveals the oldest known vertebrate sex determining system with undifferentiated sex chromosomes
Philosophical Transactions of the Royal Society of London : Ser. B, Biological Sciences. - 376(2021)1832, 20200089
June 2021
Christin Höhne; Dmitry Prokopov; Heiner Kuhl; Kang Du; Christophe Klopp; Sven Wuertz; Vladimir Trifonov; Matthias Stöck
The immune system of sturgeons and paddlefish (Acipenseriformes): a review with new data from a chromosome-scale sturgeon genome
Reviews in Aquaculture. - 13(2021)3, 1709-1729
March 2021
Jakob C. Mueller; Martina Carrete; Stefan Boerno; Heiner Kuhl; José L. Tella; Bart Kempenaers
Genes acting in synapses and neuron projections are early targets of selection during urban colonization
Molecular Ecology. - 29(2020)18, 3403–3412
March 2021
by Mikhail V. Fofanov; Dmitry Yu. Prokopov; Heiner Kuhl; Manfred Schartl; Vladimir A. Trifonov
Evolution of MicroRNA biogenesis genes in the Sterlet (Acipenser ruthenus) and other polyploid vertebrates
Molecular Biology and Evolution. - 21(2020)24, Art. 9562
March 2021
Heiner Kuhl; Carolina Frankl-Vilches; Antje Bakker; Gerald Mayr; Gerhard Nikolaus; Stefan T. Boerno; Sven Klages; Bernd Timmermann; Manfred Gahr
An unbiased molecular approach using 3′-UTRs resolves the Avian Family-Level tree of life
Molecular Biology and Evolution. - 38(2020)1, 108–127
March 2021
Francisca M. Real; Stefan A. Haas; Paolo Franchini; Peiwen Xiong; Oleg Simakov; Heiner Kuhl; Robert Schöpflin; David Heller; M-Hossein Moeinzadeh; Verena Heinrich; Thomas Krannich; Annkatrin Bressin; Michaela F. Hartmann; Stefan A. Wudy; Dina K. N. Dechmann; Alicia Hurtado; Francisco J. Barrionuevo; Magdalena Schindler; Izabela Harabula; Marco Osterwalder; Michael Hiller; Lars Wittler; Axel Visel; Bernd Timmermann; Axel Meyer; Martin Vingron; Rafael Jiménez; Stefan Mundlos; Darío G. Lupiáñez
The mole genome reveals regulatory rearrangements associated with adaptive intersexuality
Science. - 370(2020)6513, 208-214
August 2020
Shan He; Ling LI; Li-Yuan Lv; Wen-Jing Cai; Ya-Qi Dou; Jiao Li; Shu-Lin Tang; Xu Chen; Zhen Zhang; Jing Xu; Yan-Peng Zhang; Zhan Yin; Sven Wuertz; Ya-Xiong Tao; Heiner Kuhl; Xu-Fang Liang
Mandarin fish (Sinipercidae) genomes provide insights into innate predatory feeding
Communications Biology. - 3(2020)art. 361
June 2020
Kang Du; Matthias Stöck; Susanne Kneitz; Christophe Klopp; Joost M. Woltering; Mateus Contar Adolfi; Romain Feron; Dmitry Prokopov; Alexey Makunin; Ilya Kichigin; Cornelia Schmidt; Petra Fischer; Heiner Kuhl; Sven Wuertz; Jörn Gessner; Werner Kloas; Cédric Cabau; Carole Iampietro; Hugues Parrinello; Chad Tomlinson; Laurent Journot; John H. Postlethwait; Ingo Braasch; Vladimir Trifonov; Wesley C. Warren; Axel Meyer; Yann Guiguen; Manfred Schartl
The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization
Nature Ecology & Evolution. - 4(2020)6, S. 841-852
May 2020
Heiner Kuhl; Ling Li; Sven Wuertz; Matthias Stöck; Xu-Fang Liang; Christophe Klopp
CSA: a high-throughput chromosome-scale assembly pipeline for vertebrate genomes
GigaScience. - 9(2020)5, giaa034
December 2019
Hervé Philippe; Albert J. Poustka; Marta Chiodin; Katharina J. Hoff; Christophe Dessimoz; Bartlomiej Tomiczek; Philipp H. Schiffer; Steven Müller; Daryl Domman; Matthias Horn; Heiner Kuhl; Bernd Timmermann; Noriyuki Satoh; Tomoe Hikosaka-Katayama; Hiroaki Nakano; Matthew L. Rowe; Maurice E. Elphick; Morgane Thomas-Chollier; Thomas Hankeln; Florian Mertes; Andreas Wallberg; Jonathan P. Rast; Richard R. Copley; Pedro Martinez; Maximilian J. Telford
Mitigating anticipated effects of systematic errors supports sister-group relationship between Xenacoelomorpha and Ambulacraria
Current Biology. - 29(2019)11, S. 1818-1826
October 2019
Sylvia Hofmann; Heiner Kuhl; Chitra Bahadur Baniya; Matthias Stöck
June 2019
Toni I. Gossmann; Achchuthan Shanmugasundram; Stefan Börno; Ludovic Duvaux; Christophe Lemaire; Heiner Kuhl; Sven Klages; Lee D. Roberts; Sophia Schade; Johanna M. Gostner; Falk Hildebrand; Jakob Vowinckel; Coraline Bichet; Michael Mülleder; Enrica Calvani; Aleksej Zelezniak; Julian L. Griffin; Peer Bork; Dominique Allaine; Aurelie Cohas; John J. Welch; Bernd Timmermann; Markus Ralser
Ice-age climate adaptations trap the Alpine marmot in a state of low genetic diversity
Current Biology. - 29(2019)10, S. 1712-1720
June 2019
L. Ribas; B. Crespo; N. Sanchez-Baizan; D. Xavier; H. Kuhl; J. M. Rodriguez; N. Diaz; S. Boltana; S. MacKenzie; F. Moran; S. Zanuy; A. Gomez; F. Piferrer
Characterization of the European Sea Bass (Dicentrarchus labrax) gonadal transcriptome during sexual development
Marine Biotechnology. - 21(2019)3, S. 359-373
April 2019
Matthias Stöck; Fatemeh Fakharzadeh; Heiner Kuhl; Beata Rozenblut-Koscisty; Sophie Leinweber; Riddhi Patel; Mehregan Ebrahimi; Sebastian Voitel; Josef Friedrich Schmidtler; Haji Gholi Kami; Maria Ogielska; Daniel W. Förster
October 2018
Jakob C. Mueller; Heiner Kuhl; Stefan Boerno; Jose L. Tella : Martina Carrete; Bart Kempenaers
Evolution of genomic variation in the burrowing owl in response to recent colonization of urban areas
Proceedings of the Royal Society of London : Ser. B, Biological Sciences. - 285(2018)1878, art. 20180206
June 2017
Müewer Oral; Julie Colleter; Michael Bekaert; John B. Taggart; Christos Palaiokostas; Brendan J. McAndrew; Marc Vandeputte; Beatrice Chatain; Heiner Kuhl; Richard Reinhardt; Stefano Peruzzi; David J. Penman
Gene-centromere mapping in meiotic gynogenetic European seabass
BMC Genomics. - 18(2017)449
