Selected publications

The European Reference Genome Atlas (ERGA) is a pan-European scientific response to the current threats to biodiversity that aims to generate reference genomes of eukaryotic species across the tree of life. ERGA reference genomes will include threatened, endemic, and keystone species, as well as pests and species important to agriculture, fisheries, and ecosystem function.

The authors studied the role of host genetics in host-associated microbiome community structure. Gut and body microbiome composition still varied between Daphnia host genotypes, even though these Daphnia were kept under identical lab conditions for five years. This highlights the importance of host genetic component in microbiome structure.

The authors investigated antiparasitic potential of 3 agrochemical fungicides on a non-target aquatic model (Daphnia × parasitic yeast system). The results suggest that azole fungicides may disrupt host-parasite interactions in natural systems. There might be broader consequences of this parasite-clearance effect, especially in face of increasing evidence that parasites are ecologically important.

When the last individual dies, species not only disappear from our planet. They also disappear from our collective memory, from our cultures and discourses. Researchers have now studied the process.

Aquatic sediments contain eggbanks of invertebrates such as the waterflea Daphnia, a keystone freshwater herbivore. These "time capsules" uniquely allow observation of genomic evolution over centuries. To bypass the problem of minute DNA amounts in individual eggs, the authors developed a whole genome amplification workflow, and show its utility to sequence full genomes of centuries-old eggs.

The team investigated the ffects of land-use type on the composition and gene expression activity of aquatic organisms, using an eRNA approach. At times, there is a temporary difference in the active community structure between ponds in grasslands, forests, and arable fields, but not in the expressed functions. Soon after, the active community returns to being homogenous across the land-use types.

Insects declines are now recognised as a consequence of global change. The authors set out to determine the role of drought-induced forest decline in these changes. Using field samples in the Pyrenees and DNA-metabarcoding to determine the species that occur there, they found no loss of species richness in forests experiencing tree loss, but uncovered large differences in the insect communities.

Researchers from 90 scientific institutions worldwide have stated that freshwater biodiversity research and conservation lag far behind the efforts  in terrestrial and marine environments. They propose a research agenda with 15 priorities aimed at improving research on biodiversity in lakes, rivers, ponds and wetlands. This is urgently needed as the loss of biodiversity there is dramatic.